Scaffold Ga0244777_10001889

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10001889
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14749
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (16.67%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F008546	Metagenome / Metatranscriptome	331	Y
F019119	Metagenome / Metatranscriptome	231	N
F037129	Metagenome / Metatranscriptome	168	Y
F047578	Metagenome / Metatranscriptome	149	Y
F048842	Metagenome / Metatranscriptome	147	Y
F049561	Metagenome / Metatranscriptome	146	N
F096905	Metagenome / Metatranscriptome	104	N
F098924	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000188911	F008546	N/A	MKTAVEWWKLLIVFVSAIVLEANSIAGLRFLMDENWVGMVMMVAINPFLCLPMNHYTIEVKSFKQRALIALAFSLGFAVGVMTIRPFFI
Ga0244777_1000188913	F048842	N/A	MKNKVGIVLITLLPIILWGLALFGEIRCIYKMCTCNWEPVGKAEIVYTVGTFTGAGVVIGYLSIEDK
Ga0244777_1000188917	F047578	GGA	MKAICIDSSNKPAKIPIEQWIKQGETYTIIKIVKMGLQDGRYGVLLKEVQMSADCFPYEYYDADRFVPLDERVANMEEELVKEADLELI
Ga0244777_1000188922	F000716	N/A	MYIMEKFKKQVRNYQLYAGKTYVQYEQDGYSAYQNYLYKRALYGLDALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQQITIKYSNVIFETLFPKSPLTQFLLADTETDEKFKNTLTFKDLGIEKQDIIAIFIAEGILPKNFLDLKDAPLALPRLKYEVKA
Ga0244777_1000188925	F049561	AGGA	MTKIRVELEETDLFNAIKKIIDHPNRVEIAKVLTSIIAPHEKVSSIFFKTYFGGAAPQVLPEGTMITVNPSRLSYKTNVDGMKRLGLLNISGHATAIIKEFRGFHESHNYYVNFMNVDDNDKSYEDTGFINYQDVVSIIEEL
Ga0244777_1000188926	F096905	N/A	MESKVFTSVLGFNFELNLVDNDGQPIRTGARRVDCYLSSDTPNVGTKIGGEKWFTNFNEPLLSKIRDYRKRND
Ga0244777_1000188927	F098924	N/A	MLGKLFNRKKTYPKDNKFEVLIIGEDKSDFQEMLGITDKRKEELMKLAFKTYEQEDLFSTSCKIAVAECTHINEVVFMMSLLCKIKELKNNPLSALLSKFSDGE
Ga0244777_100018896	F019119	GAG	MTESYLGTQFVIYFDREMEKKITHEMLELSAKIAKEHYELTDNVDRNLNYLWYMYHKGSKVGTFRPFVYMAELQLLKRMGYINDTEIKNMIAMLESSDEENLHMVTLSIKSFRDLRIQEHGEYSKVNKAYTKIAKDYPHEILNHEVFMQTMAAK
Ga0244777_100018898	F037129	N/A	MMSVNKKDYKVVEERDGHMTWYLVKKKFLWFFWKTIKNNSGSPMRYTSRKAAQAYINFLK