Scaffold Ga0244777_10001541

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10001541
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16449
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (31.03%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062581	Metagenome / Metatranscriptome	130	N
F098953	Metagenome / Metatranscriptome	103	N
F100736	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000154111	F100736	GGAGG	VDFESAIRITGRQHLPNPEQLSAHLADVLTWRQLRKLAKRNHIHQYSYLNKKGLATVLAYYAFNRASRHPQINGLEIVRNN
Ga0244777_1000154112	F098953	N/A	MAWKSYETTNYDERLYELLHCSLDRLIDLGSRMEAHEDVLATHEEDLETGEVTKLPDVHPEQLLMAQLGLDGAEDEAEITQKMIQLVSRIMIIRNARHIVKDSPTQETD
Ga0244777_1000154127	F062581	N/A	MADAYYDTETIPLTSLVGGRIDLDKLIEELDTMYPDQYPDHEMNAWQTGRMAGAIEIIRFLKSKRNP