Scaffold Ga0244777_10001380

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10001380
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17519
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (85.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004477	Metagenome / Metatranscriptome	436	Y
F022885	Metagenome / Metatranscriptome	212	Y
F023846	Metagenome / Metatranscriptome	208	N
F078710	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000138018	F078710	GAG	MSHSTVVKETEDGELYIELSDELMEAMGWDIDTELVWTVYDDGKIGLRKRTDDSSNET
Ga0244777_1000138022	F022885	AGGA	MTELVDNEFGVEYEQIPIKKLRIFRVGKQWLVEYQRYVRLWAPWDHFWWYNDGQYVEYYDALARVNELKANGYANVPRFQKVKTFDVSSE
Ga0244777_1000138027	F004477	N/A	MSLMSFFSSPPITSFEQLELEKGKIQLTIMKMVTLVLSSIMLAVVGIFLIGLFLPNHVIDNNEIFKIIGPAFSMIIGAFVGAFATMMGMKTAEFDPNVKTQELGKTDHKQLAEAHVINAQAETIETENEIKMMAAIDKYKDSDEDFGPF
Ga0244777_1000138033	F023846	AGGA	MSDRAKKITELTSIGTANTSIASGDIFIVEDISANTTKSATLSTLRKAIVQGPFANNTAANTGGVALGQLYYTAAGDVKVRNA