Scaffold Ga0244777_10001339

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10001339
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17812
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (45.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018140	Metagenome / Metatranscriptome	236	Y
F028171	Metagenome / Metatranscriptome	192	Y
F033776	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000133918	F028171	N/A	MHSLTEGHLMTDHIRAKLEALITDSSMFNAGQQDERLRLCRLIDIRLEQLHQLASHPHISARREELLNIRQALREHQ
Ga0244777_1000133920	F033776	N/A	MMANANDRRPNGKGRNFTVNVRMSREEIEAARRLGDGNISMGLRWAVRYATGRHMQPIKLSTMLRSAAVLASELEVANHG
Ga0244777_1000133933	F018140	GGA	MTDEPESVGGVFVASLPAAIAAGLFAIGALLINMQIQSARIEATLTQMAAAVNELKNDYKVQLSDLDKRVRQLEIRK