Scaffold Ga0244777_10001141

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10001141
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19594
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (43.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010540	Metagenome / Metatranscriptome	302	Y
F052599	Metagenome / Metatranscriptome	142	Y
F102701	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100011411	F010540	AGGA	MAKIRVIVNGVSYKTTTTAIKNRSSSDFTMQNDALFYVLECMGKHAGFGTTVRYYDYKMVQHKYDVQLTRL
Ga0244777_1000114110	F052599	N/A	MKYYTIVFPGECGQHVQETWRTDQILQSYYTYWVTKMIQNNNYLDISEERCIDDWCVVHWAIETDECGNKV
Ga0244777_100011419	F102701	GGA	MNEEDYDVVIDTLQKKIDALWKMTKSNMDNDMMNIMDDIRLKQIDELKKAIELWLWKERK