Scaffold Ga0244777_10000886

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10000886
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22537
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (66.67%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F007265	Metagenome / Metatranscriptome	354	Y
F007919	Metagenome / Metatranscriptome	342	Y
F008402	Metagenome / Metatranscriptome	334	Y
F012341	Metagenome / Metatranscriptome	281	Y
F020907	Metagenome / Metatranscriptome	221	Y
F029435	Metagenome / Metatranscriptome	188	Y
F037722	Metagenome / Metatranscriptome	167	Y
F057309	Metagenome / Metatranscriptome	136	Y
F063622	Metagenome / Metatranscriptome	129	Y
F072267	Metagenome / Metatranscriptome	121	Y
F073557	Metagenome / Metatranscriptome	120	Y
F085383	Metagenome / Metatranscriptome	111	N
F086835	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000088612	F007265	N/A	MTFQPYNIVPGTQIVHNLTDVYELTDEAEEMVYRVELNADNGGIYIRSSEKGLEEGSKNITEDMSIGNKELSICVARRILELYSVN
Ga0244777_1000088620	F073557	GGA	MTDAQICEMVNMHRYLMMCEIKHAFHKFCAENGNQDYSAANRSEAFNDTKWIEFAKWFKDIRDE
Ga0244777_1000088626	F063622	GAGG	MKLHERLTEWYYTHDAVQSGDVIANEIVDVVKDWLKTHHREETKYDADYNAGWMDCIETLEKDAR
Ga0244777_1000088632	F086835	N/A	MPETDISKILIEGDTVTIMGVRYQRIIEPQSFYDKLYGLLDDNLDERVDFHDMTIRVLDLIRGNIPEYKKGVGLPEYSVGYNDSIREVNENLFK
Ga0244777_1000088633	F007919	GAGG	MTERLKFTQVSRVICPKTGIHYLDAIDEYGNHWTAQQETSVEKWITYKQLWTQDPQQPVKLCLKPTSQKFS
Ga0244777_1000088634	F029435	GGAG	MKKQELKELLTPEFLSTLHTAVECCNWNADMIETMEFCDWCYNMAGQPKPQYDMGVEGYD
Ga0244777_1000088639	F037722	AGG	MTKHEIGETIGFYIFVGLMGWALVSFFPLTWGQALIISWMYNKLTDVLE
Ga0244777_1000088640	F008402	N/A	MTIEITNQVRIQEYGDYWYTVEDTHIDVGCDGCTISYWQFDKEKGDKRIQHICMGNVEALAVADAIYKLFKVN
Ga0244777_1000088644	F072267	AGCAG	MLTQVFEMTEPTLKIGPSGYKLNPEKLKGAPQSVLPYILGCFYFTEDYEYFDVIKDYLDIPEPCKTLEEISQELDEKIDDLIERTKNSFYKSKYIAETLYDTKFNRIIDNFEYAKEHGQFPPKLTYSNLIATGSNITSSFVIKQGNKHEGYYTFGNCRSFKYYMPTKPNFIVRFFMKNLLGFFWVDEK
Ga0244777_1000088658	F037722	GGA	MTKHEIGATIGFYIVVGLMGWALVSFFPLTWGQALIISWMYNKLTDVLE
Ga0244777_1000088663	F057309	N/A	MMNPLLQKYEELYGKKEKPKLPRIEDYEGEETFADELKKSKPPTLKSYDLDDLKTSFQQVAEQLQNDEAQVISMNMEFGDHMNKITFEVYVYKP
Ga0244777_100008867	F085383	AGG	MTETEKLYKICILDLLIAIDEDVVDWRNYPKLWTAIQKADIALDIWAGMNLKQIKQELEG
Ga0244777_1000088671	F020907	N/A	MSKSYISCYNNETKELEHDEQLLNSLQGTMATIDPYSVKKEALDEYRIDTIEERLTRIEDKVDLLISQLKIEFYKKNDGTSR
Ga0244777_1000088678	F000919	GGAG	MRFRNIEFRWSTYNKKHELVKWYKLEERNYSYVIALFDKTNEGYNMRTIGDRFFEDKDAWVVGKHAIEFLNAIFEIERIEEELK
Ga0244777_100008868	F012341	N/A	MNITMKQFFDMVAKTIAEPHSQICEHDKRRAIRVFLYLDEFMMENVPEYCGDTELGEIDFGAYAAGVLDEIEGK