Scaffold Ga0244777_10000842

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10000842
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23134
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (15.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010163	Metagenome / Metatranscriptome	307	Y
F028939	Metagenome / Metatranscriptome	190	Y
F046638	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000084219	F010163	N/A	MLLLKITNKSQLLYNLTICKYVKNMYHIIKTLKFIKKETFAFFTRWLLLFFFTNLYNLKVKANYFVLYIYFSSLYNQKLISYVISINLFSKNTLININNIKGNPKFFYSAGMLNLQKKQKFRQPKAIILILRDLLLKFKIFKIKPGAVHFNNIFFNHQSYIFKKLKHKIFTKLVISRSNLPHNGCRLKKKKRVKIRTRAK
Ga0244777_1000084222	F046638	N/A	MIKTLKSSIFKNIIVLIHGPIVLLNGNNADLTLKELKSISPLISLLGFRLNNKIYSRKQIKNLKKVSYTDNVFEVYSAMKVFTKIPYYKFKSRKVLPISK
Ga0244777_1000084242	F028939	N/A	MKTHRIRTRNYKLFRYNLLKLQIYSNKPSFETAPFSKNILEQVEAYLKQVLKIIYEYHVHQFKILFIGFPAVCKMKRLKLIHFTNHNFISEKS