Scaffold Ga0244777_10000630

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10000630
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27401
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (65.00%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Associated Families: 15

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001125	Metagenome / Metatranscriptome	769	Y
F002245	Metagenome / Metatranscriptome	578	Y
F002489	Metagenome / Metatranscriptome	554	Y
F002935	Metagenome	519	Y
F003379	Metagenome / Metatranscriptome	490	Y
F003422	Metagenome / Metatranscriptome	487	Y
F005741	Metagenome / Metatranscriptome	391	Y
F020171	Metagenome / Metatranscriptome	225	Y
F021757	Metagenome	217	Y
F030095	Metagenome / Metatranscriptome	186	N
F031497	Metagenome / Metatranscriptome	182	Y
F062746	Metagenome / Metatranscriptome	130	Y
F076101	Metagenome / Metatranscriptome	118	Y
F084239	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000063011	F020171	AGGCGG	MSEQFIDTIAEHITGAIQQEIAEHLFDQWSYNNLESGSDYAEWQFMSFASDELKQQYNEYYGYIEGDEFLL
Ga0244777_1000063013	F001125	GGCGG	MGDRANFGFKDRKGDTVFLYGHWAGHRMLENLANAVEAARPRWTDESYATRIAISHLINDEWKSETGWGISVNALTDNEHKVPVIDWANATFTLMEEDLTTEVFSSSLDVFVNKYSQLEEPAMV
Ga0244777_1000063017	F003422	N/A	MTNELVSSKYTFVCDPDECDSLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATIPPITTTKEEKMETTTPAVIVPDTYNANLLVTYKVIKGYSDPEYATDKVASIEWDLHNARQTQKRNAVLQDKIDAVKDIITEAYGDSDDQETLRSIAEALDIALTRTIEWSATIEVSGTMELDLLEDSDTDVEQEIYDNLSVDTNHGNIEVIDQEVTNVREN
Ga0244777_1000063018	F002935	AGG	MRDRTKGYVGNVLDGKKLAIIATEIVKAQYNNPSELTIDNLLLIELEEKNVFGDPKYAVVCSEGVGWEQDEYGCLEIPTNIGAMGLYNGRVFISIDKVKSCQTLFKEDISDYIRTFGDRLDRNCSLWQSKMSVEPATILG
Ga0244777_100006302	F031497	AGGCGG	MGKTPEIKVAQAIVNLTEDHWFNPAIFGRYLAEQPMYTIDRIMEMVASIISEQSKIHGVHGFTSEGLMLAVELNECIKAYQEVTQLNNLKLPARSFTIKKREEPIVRQGFGWREEEDPFS
Ga0244777_1000063021	F005741	AGG	MANRFRVEIYDANKMNDVTIYSEQGVDKEYLTELVYSNLRKFSGKVNAYVFDNVKKKKTTAMFLDEHTVNKYNTI
Ga0244777_1000063025	F002245	N/A	MKVPHTVEFEAVIDLDKIPAHLLPALVSMDSYSIEKMCKGATLHALGMSNVIPLANENNTWAEVTIKEGN
Ga0244777_1000063031	F076101	GGAG	MYKITLSYDGNAPHWQQDYASEFDAWKDFFAFTDWGFANEFSTVNIYNSEMKCFTRHFYREERKVVTVK
Ga0244777_1000063035	F021757	GGA	MLSKKHYIGIAEILSSYKDLIGNEFTYHDLVEDFAGYFAEDNLLFDAQRFVDACNK
Ga0244777_100006304	F000441	AGGAGG	MKMSDVYINDQLNKAQQLLWGGSETENIEAHNIIAKLIKDRIEQTDLT
Ga0244777_1000063044	F003379	AGGA	MKKLYALVSTIAIAILSGVALSKFLNWAGNVEIFDFDLDEDIDYEEL
Ga0244777_1000063050	F002489	GAGG	MQEDLNKEVSNNLEDNLPMVNYIMLHRMYDLLTLISNKIVGSEDTQKMIEYHEAGYLLGPAPSFTPGEEE
Ga0244777_1000063055	F030095	AGG	VAAQKNFEVDQNTTFTFEVQYLDEDQTPIQLNHHTAKLQVRDTQGGKKLAFTLTEVDGIVISPTEGKLKISISADRTNKMFYPKSAYDLVLIDPSVNKTRLLEGYMTLSRSVTV
Ga0244777_100006308	F084239	AGG	MEYLKIHEISLMQDLEEIDYVNEHHFYRCKEAEILNTRHILSVATDIMNNSNEREYE
Ga0244777_100006309	F062746	N/A	MINAVHDAKLFYLRTPSDLMDKTELRKDLEDAVSFLQGLWAEGYFD