Scaffold Ga0244777_10000343

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10000343
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37285
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (28.07%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006936	Metagenome / Metatranscriptome	361	N
F008495	Metagenome / Metatranscriptome	332	N
F009267	Metagenome / Metatranscriptome	320	N
F014504	Metagenome / Metatranscriptome	262	N
F018136	Metagenome / Metatranscriptome	236	N
F020694	Metagenome / Metatranscriptome	222	N
F023103	Metagenome	211	N
F028456	Metagenome	191	N
F034182	Metagenome / Metatranscriptome	175	Y
F034928	Metagenome / Metatranscriptome	173	Y
F046247	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000034313	F028456	N/A	MNKKSKVVKISHEAIGNAWGISKQAVAKWVKMGCPTSSIEAATKWRDEYLQASGKAAPATLNEARLEKTLLESERIRVRLQQDRGELVEIAVVREAGIRIGAIFSAKLAALVNDASGALAGLDEASLRKKLHERTQAILAEIRNELEKV
Ga0244777_1000034315	F006936	N/A	MEQNEITALTLPVIETEIRTAYAEANALAVTAKGNARAAVLRMADCGQMLMVAKDHVRGNRNEWLASLGIDPDKAAKAIHLARNRDQLELDLWPADMAKLGAQMLGILPPPGSAGREENDPERTTGASTHWLTYAGKLQRSFADLFTRKPVDQWRADERESLRVSLKPIVEIYNKLI
Ga0244777_1000034316	F014504	N/A	MHDLTRDAAEYDEASYTPDFYSFDDPTAGHAFRMTAYREASEKLLVVLNKTISFLAEHGYSRSKTLWGVAFALGHPLTAGMSMLEAGRELGCTKQAISKIAMDFLDTTGLPPSTSLKSEEARNTYRKTNTNKYGTKRNNGAHAASH
Ga0244777_1000034321	F034928	N/A	MQWRGYPLRCWPNHQDDCYRWDWEIQIDGKWVEVVTQATRWIEDEAEETLQRYLERKKT
Ga0244777_1000034336	F034182	N/A	MESHTFHSLVGTSAPAAAVLISFSEVEAWLRVLSLILGICIGAVSLYKMLKSKKP
Ga0244777_1000034343	F023103	N/A	MAKFKFESVKFEQIMKDYATIREVTIPDAVMLNARLLCVELARRTQPFGDKQESGTIRVKNDIGKIIKNTEQLDEYADRVGSQRIKARLKALIKSGKFDIVETILRNIGFLNKWTGMEVISGSKMKSVHNQARNKTTGRTKSRGSKLFIASDSDHATYIEEVQKRVGISKGGWADCATQLKKVNKGGLLANFPPWVKKAMRSGSGKVKDMTSDLKNPRVEMTNDIPWARNVITKSEEEFAKAVIVTKMKTQMNTILKKRQKTLA
Ga0244777_1000034344	F009267	N/A	MKKTQNTDLVKDDEILRIQAMEDGPKKVNGRILRPITALTISWMQRNEIFSGNMDLVWKAAAFAFLHSEPTSAIRSVVNDRDTFVNAVDSWIEKNMAHHLEVGSMSDAMNSAFELYNASATESKSGSGSPN
Ga0244777_1000034347	F018136	N/A	MITDSTYTLTLEKALTDTFVLALQQEMQSALVVTAAENFGTMTLPACFVKCKRQRESIIDSAIFQFSVDIALIVQADDMDQMAMENLWSQVLCVSHDITGLKTKLNAVRPQYAFVFGILRDGSVSLSSNERHFERSVTITVHAALFAS
Ga0244777_1000034348	F046247	N/A	MIIPPNEQGWAFDESTAWKLVYDGSTIIFFDETEKAISTQSVLFVGTKGECEAEIARLGLVDVTAQENDNGLDLHADS
Ga0244777_1000034351	F020694	N/A	MNELPLAVTFGERNFLANRTTYKRDNSLADGGFMDSASMTITAIYDSFVQTISLGDVLVIGGRRFRVTSAELSQDAVSVDFTLEDINK
Ga0244777_1000034352	F008495	GGA	MGGRKNAGAILYVLNILIVYHLRLGDIARCLPIAKHFADQGHNVMFECLPEYHGLFEMVDYCKPLYPQNDHSGFHRIINLQIWPDLHEDFCASELGWSDYVYGLFPEGKDIDRQIVLNSPAIVTPPELKSWVLCFPTGYSQDKKIHPAEVIQVAHQVANGRPVLCAGKAAHGMAEFESIEYMCAYIRDAQEVVTINTSTSILASALRKSWVHISDSPKHDFKHPNQRRIERKF