Scaffold Ga0244777_10000255

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10000255
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42617
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (86.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003439	Metagenome / Metatranscriptome	486	Y
F085204	Metagenome / Metatranscriptome	111	N
F099186	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000025513	F085204	AGGA	MAINRTDEYMPATDDFTIDAVVEGRPEQATSSAVQSGWDAADKLSTSSGDFPTEFKFTDGEFTVIKFIDQNGPFAIYKQHFLQQKTVGKRSYVSLGANDPLCTKLGSKPEDKRAFTIAVITPSGVQRQMLIASPRLYKTLHSAEFSPQGPLTKNYWAISRTGKMQQTVYNLNSIKPRDLLEDWGIDEKMAEDGVAAIKPFERSVIKEHTWEELEEIANSLL
Ga0244777_1000025533	F099186	GGA	MPGKYADGRYGHKPWDKDRPGINTPEEAAFPPQEYLGPFQSNQDRLLNQSLATWTMSGAELQALVRPNLPQINLFPDRYGYTDQELTIEDVIGLPGARSAQRVESDFSQAPAGNQSTSRNTLGNTI
Ga0244777_1000025536	F003439	GGA	MTVNISRSQNAELNEGATDGKYRKRRPNTTVAPAMGDELTQKNRAGLHPYMNYGFINSEEPSKVNPAGN