Scaffold Ga0244777_10000251

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10000251
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42811
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (59.02%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005589	Metagenome	395	Y
F015339	Metagenome	255	Y
F018175	Metagenome	236	Y
F021538	Metagenome	218	Y
F040107	Metagenome	162	N
F049636	Metagenome	146	Y
F085717	Metagenome	111	N
F090404	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000025122	F040107	GGAGG	MTGIEALSLLKEGKILRRESWEPHEKCKALDFFGQWIVHLVKEQDDEKLDKELESIFQNSFTFTKTTFDDFFGLFDTIDAGDFLHDDWVIVE
Ga0244777_1000025123	F090404	GGAGG	MKFADVIDSLMAGKRVRKTNWESKTAFFLYDQEDNTFDFYEVLDGEVCKTQFYTELNLTPKDLMSDFWEVVE
Ga0244777_1000025126	F049636	AGG	MTGKEALNKLEEGFTMRRESWDPDVKCKAYFSIFNKTIPESVPDDPAFDEYISFFDCLDNGDFLEDDWEIVE
Ga0244777_1000025128	F015339	N/A	MSTDPKIYGEEYVRGRIWSFIRFHKYLREIANIFCEEFQYDKDDIIEVSMSDDGKTVWVHFDSGAIGFASELLWDKNVRETFKKNYEI
Ga0244777_1000025129	F018175	GGAGG	VEKLPKSQKEYYHNKIREYEKRTGKSMNVKGVSKMYYDYDTEDTIFNYSAALDLINQKNIYIYHELLVEEDILSNGTNWFKYGYTKKDDKIYKYYYEIKKWGNETKELDSDYNKSKVWKAAMLMTKHIGSNFDDFAKENNIELKRDINWAVKMVEYGKMVSREGNPSLTLFPKKYDHAESTITTTDLFAEDWVIVPNKTFEDVLDDLYAGKTVRRKSWHSDWGVGKYARYGKIIYLDFIADDWEVVDVVAEVNKQQEQILKDRNEH
Ga0244777_1000025130	F021538	N/A	VDKTTIINCDCLCHSLHVRPDTESKTVDISLWNYGFNDGKLHWKKRFKILFDGFAYSDLVVLDKEELDKLITALEEARGKIA
Ga0244777_1000025131	F005589	GGA	MARFKHSFFRYIPSTDERQSFFKYVESFETDNDSVPKYDDHFCIDHIVNLDNGQMRVKNHSAPEYCVSKYVGWSLSLPPVEKTNKQEIYVVIHRSSFAHKRIEFDEFLEPKDKRYTQEEWEQLLSTIEKKFNRQKEWAKEGIRVPSQYEDGTQVFRAEEEFRAFSLGRRAYFLYHLVNTHRFTHLVRRLNIGYTSG
Ga0244777_1000025140	F085717	GGA	MNRFNDDFDGYNNRKHREFLSKKSKYEEEEDLDELDIVADDISEKFMGSYGIHNVTPSKAKNAVVVYVDELSDISESVKKEIEDMAKPYSAIIKSSKLKNDNQHLEKYFKH