Scaffold Ga0244777_10000069

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10000069
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78506
• Total Scaffold Genes: 116
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 87 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021767	Metagenome / Metatranscriptome	217	N
F039621	Metagenome / Metatranscriptome	163	Y
F044442	Metagenome / Metatranscriptome	154	Y
F059755	Metagenome / Metatranscriptome	133	Y
F073096	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_10000069109	F039621	GGAG	MKSSILVWLGVILVLIVLAPLATIWSLNTLFPILNIPMGFDTWLASLILAGVVGGTTGVSFKK
Ga0244777_1000006924	F044442	AGGA	MLKFANLSMSQKKFVVSVIESNPQYKKDPQITLKECASIYYTLRDQRTGVKGEKIGYPNWLFNKNKVERGVYQLPVPTAVELSQFAKDSAVKPAKAKPVKVAKVKVVKAPAKKAVAVKTPVAKEDNMEISRLQKIIDDSVEVDSDTEDFNAILRENGIQV
Ga0244777_1000006966	F059755	GGA	MNFLEKANYDWMELLNFYERPFRAKLTPSKVWIDLDRYKNDSVGLANYAKKWRTKVEWRKEKSKAKWTETYVGIGGEYAPDERQITIQIYTDRFNSFSFTNKSWTAFKMRFIQTLMHELIHFMQYERRDDSWSNYVVPYKKVGIAKKDEQRAYLSEFDEIQAYAHCVYLDFKMRRPRVEINILLNRYKKKRDSSTLHFFLKTFDYDLRNNMATRKIIDQIGKWDRKYNRMT
Ga0244777_1000006997	F073096	GGA	MKKLILLSLVLCLNGCSVIALWPKPHDPVMFDNLVSTKIAVEKLNCDDKNWTDAETKLQHLKVYTELRKDPQAISIAQLQEAISKAKASDKKLFCESILKINKTRIDVIVDAWRGR
Ga0244777_1000006998	F021767	N/A	LTHGEEDKMELDQIKEKMSAGEAKGALIEKVTFAVLPIMFTCVVYLMNALSNVNHQLTILESKMQLVVTSDNKQAPNMGAELAREKLRQDFMQANTEALSRSSSNKAVLDTLVWRVQELEKHKEKQSNNSGKK