Scaffold Ga0244777_10000046

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10000046
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 101906
• Total Scaffold Genes: 124
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (45.97%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001968	Metagenome / Metatranscriptome	610	Y
F011477	Metagenome / Metatranscriptome	290	Y
F018881	Metagenome / Metatranscriptome	232	Y
F048106	Metagenome / Metatranscriptome	148	N
F070113	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100000461	F001968	N/A	ELWSEIADAPGEIFDLPELRELDEEKFNLNDYLNSNIDY
Ga0244777_10000046100	F018881	GGA	VTPKILNSDGNYDEWCEEEIIKSYKDAAEYDDVLFGDHDYSYIWLNNKTNESP
Ga0244777_100000465	F070113	GGAG	MTLNKAQFEQFVENYVSDIVAGLDVDQLSTIAFDLLVREYETYTEEQIVNEIKEIYDEEYAQDLLESATAVPVA
Ga0244777_1000004689	F048106	N/A	MKDLQAFLDNIIDIFTTKKSLPKDVMNDFIKYFYFTLDKEIKSNKSEVLKNKYIKIRKNGLNYIVANKEAIMANIRKKKLSK
Ga0244777_1000004692	F011477	GAGG	MSVAALWAWVIANEAAVATILLVVSEFLGAVPKLKANGLVSYVILQVQQNLKKKGAVDPT