Scaffold Ga0247668_1000140

Overview

Basic Information

• Taxon OID: 3300024331
• Scaffold ID: Ga0247668_1000140
• Source Dataset Name: Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21192
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (46.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 40.4449
  • Long. (^o): -87.0297

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016574	Metagenome / Metatranscriptome	246	Y
F087640	Metagenome / Metatranscriptome	110	Y
F103772	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247668_100014011	F016574	AGGAG	MLEPDVISRIRHIFLQPRPHVSIMQAEGLLGWSRRQMSEAIGNGEVELWTTPLGKWFPRAEMMAKALEIWPMHVIEEALGDEADGILPQAIRSAELRVRLPRHHIDMLHYRADQQETTVSGVLERELDGIASAHIEELSAALPGFAEAMAWPAG
Ga0247668_100014023	F103772	AGTAGG	MRKNVASAIFLVLAAGCASTAVNERPEPNVVELWSVPSHASVSLDCGAGRIEEGTTPLRVDVPRYPERCSIDFAAEGYRPLHMRFDRGLVLREGLPLREEEHHQLEQSATTLDMLLFPLQNLSDNIQNAAMRKLRADYRLEVKLIPR
Ga0247668_10001409	F087640	GGTGG	MSEAIEAGEVELWTTPLGKWFPRAEMMAKALEIWPLHVIEEALGNDADGILPQAIRSAELRVRLPRHHIDMLHYRADLQETTVSGVLERELDGIASAHIEELSAALPGFAEAMAWPGEGW