Scaffold Ga0137417_1018688

Overview

Basic Information

• Taxon OID: 3300024330
• Scaffold ID: Ga0137417_1018688
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6550
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000232	Metagenome / Metatranscriptome	1513	Y
F004288	Metagenome / Metatranscriptome	445	Y
F008865	Metagenome / Metatranscriptome	326	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137417_10186883	F008865	GGA	MKEKQGSSTRRNLHVLCYEHHTEMLLECRSEPAESFLYSCREPGCFVDYHSSQGYFIEPQNGDRSEPEIKPDVHCPKDGRLMYLAEVRPEKKSFRLWKCPECNAIRTNGEISSAAASSG
Ga0137417_10186885	F004288	GAG	MNGSAQRRRPKQRLFDGRLEKRLTMSVPVYLASLGEPSARERTVTENVSPHGARVISKRSWRSGEEALIAPLTGEFPQVGTVVYSRHKNGGGPLCLGVEFLDRSVKWESYSVPSVGRLSLSRRDGKES
Ga0137417_10186888	F000232	AGG	MAVLAVHPQGRDCPSWQDPTNYISPHERQRNDRIEKTCQHSDMKHPKQNKRPPRIHPSASAVPSYHRILVKHGLIEKTLTIPDAYEVFLKVGADPEVQKLRRKVGRGNKMKHVPALYLATAMALQGMTKQELEALKLRI