Scaffold Ga0137417_1015789

Overview

Basic Information

• Taxon OID: 3300024330
• Scaffold ID: Ga0137417_1015789
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4815
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013993	Metagenome / Metatranscriptome	266	Y
F022049	Metagenome / Metatranscriptome	216	Y
F082196	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137417_10157892	F082196	GGA	VSFGRKRRRILIVGEEPSARDAMRILLGSAGCECTVASSVQQGLATMENRNFDAVVLDPQSLSSPAAEVISRIDEFHPNLLKRVVLVTEDSGDSEIRDLAERHSIPQVQRKFLLQQLWGILETLLRSDAVPQDVTPVARLISDSLHDPLPAGVRGSQDRSRRLLFSSGSLTVDLLVEPEADSNRIALWGQILDSARPDRRFAGVSVTLQGWKGPVAQATADEFGEFQFDFNFVSNLSLEMRIAETNYITVPLPVLSRSRRSAAGSS
Ga0137417_10157894	F022049	GAG	MPSAIRYNIRSEKDGANVKVTYDLRVPVGGPALIASFSLAVDGKELIDKTHWVPGQVQFNGMQFTQLQHPENDVTVAFSISSNEGWIAANSAVLRGERRFDEVVFSGS
Ga0137417_10157895	F013993	AGGA	MKTQRAFSLLQLLIEVAITLFIAGIVVPSLLRSDLARNEALAAGSLHTINIGGVVLSCTNQNLEFVILGGLVGAMAAFAIPFPASTPKNTTSTRATALRTAPL