Scaffold Ga0228631_1097090

Overview

Basic Information

• Taxon OID: 3300024329
• Scaffold ID: Ga0228631_1097090
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 39D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 705
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024922	Metagenome	204	Y
F044426	Metagenome	154	Y
F070652	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228631_10970901	F024922	N/A	MNCQGYMMNTKDLNENRLLTKKDFTIFFLPHELHGFKQMNIDELRLTYGVTHSIKGKYKDMRGNCFKCLTPLRADYMAYKNYCMDCQ
Ga0228631_10970902	F070652	N/A	MTELKQDHFELIDGNKQRAFEERKQMRVELTEYIDKCNTHELSRLYDEYKRLKRK
Ga0228631_10970903	F044426	N/A	KPIDKNLEQLLYITGQSHANTSAYSSNFGKLRLLRELVSEIEELNLDNASRVKIRLWLDKHQNKIKVE