NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228635_1015566

Scaffold Ga0228635_1015566


Overview

Basic Information
Taxon OID3300024328 Open in IMG/M
Scaffold IDGa0228635_1015566 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 44D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2535
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006728Metagenome / Metatranscriptome366Y
F037990Metagenome167N

Sequences

Protein IDFamilyRBSSequence
Ga0228635_10155661F006728AGGAGMTKIDFNNIVIRHNGRTISIAQHWTRTSDGDFLNAQEIADVDKLDHEDYDPIRFDDTIDGLINALQAVKQEIDL
Ga0228635_10155662F037990AGGAGMTFDKATARKIRELMQKALDDADIDGVTISVGNCSFTEGEATYKVKVLLDGGKSKEQTDLEQMATLMSLDTSKIVTLQGMKVSLVGYNSKARKRPWIIQNLTTAQKYILDDDTAKRLFGNTEEVKQK

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