Scaffold Ga0228635_1013561

Overview

Basic Information

• Taxon OID: 3300024328
• Scaffold ID: Ga0228635_1013561
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 44D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2780
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017725	Metagenome / Metatranscriptome	239	N
F064404	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228635_10135611	F064404	N/A	MIHFFGYFKATNHIGISSVGFEKAAIFLRNRDFKVVELFGIKDNEEVNLLYEDEEPLWITKDHHLEISSLLSNNDHTLFTHVKIELADGGDINYSAASLYVKFPDGEDIKSKTIMLLETMGYFAGEKIFDFCSENPNMYLLEFVLGMEPEDITDEFERMKSHTEYIDREEYLLD
Ga0228635_10135613	F017725	N/A	MRNLKMKLSFENRLHLNKTAGSLSHVFGEGYFIYDEYGREVNAFEQEKDFNRLIKKFKYRHLLIEKLNTEHKGSFEFGEDNVLVINEKPILNDFWNIPKNNKEVAIYFKCISEKIESYDFTKK