Scaffold Ga0247666_1010804

Overview

Basic Information

• Taxon OID: 3300024323
• Scaffold ID: Ga0247666_1010804
• Source Dataset Name: Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2004
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 40.4449
  • Long. (^o): -87.0297

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008145	Metagenome / Metatranscriptome	338	Y
F022212	Metagenome	215	Y
F028279	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247666_10108041	F008145	GGAGG	MAVRGDEVAGSIEAHVRDAMEKLVGEIRSSIEDVREVVDSQLKAALQSVQADVNAVSFMPHIQKSIGELEESITAALPPPVVSAPAGSGASRVKKAVQTVEHGKSQVDILNALLEQCLDFGSRAAMLILRGETFSGWKGVGFTAAGGNDEMVKRFNAAPGLIPELDRVLRNEQVVIWDGANLSTRLGVSASVQAI
Ga0247666_10108042	F022212	N/A	MRRFLILIVLAAVSCSGGGRDAADNQSEWLHVLRHKQAASAPNAPTHAKQVYADTLGAFVLRHPTHSRAREVYQHIQIDFARELASLGRYQDAVRIYRAVLVHDPRNVAAIRGLNDAVDHLAVSHEKLMALEKGMSQRDVANLLGKPIPGWQVRNERPDTTIESWYYRRTDGGVAGVYFRDGVLFAAEENSQAKLAPLMKQ
Ga0247666_10108044	F028279	AGG	MGKARELKKRADSMLEEVFRSLFEEIDTEKIRRDVAALRESEPDFHSRDHARLLVRRTALRCAAAGAVSGLPGGM