Scaffold Ga0247666

Basic Information
Taxon OID	3300024323 Open in IMG/M
Scaffold ID	Ga0247666_1000002 Open in IMG/M
Source Dataset Name	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024323 Open in IMG/M

Scaffold ID

Ga0247666_1000002 Open in IMG/M

Source Dataset Name

Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	289704
Total Scaffold Genes	282 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	172 (60.99%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

289704

Total Scaffold Genes

282 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

172 (60.99%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	40.4449	Long. (^o)	-87.0297	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

40.4449

Long. (^o)

-87.0297

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002324	Metagenome	571	Y
F008640	Metagenome	330	Y
F010845	Metagenome / Metatranscriptome	298	Y
F013826	Metagenome / Metatranscriptome	268	Y
F095945	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247666_1000002164	F008640	AGGAGG	MDENTRSRIRQIFLSPRPNLALLIAAELLGMTLKELKREIEDGVIVTVSTALGQRMARQELVAVAMRVWEQAVIEEALGEDATSVLPDAIRLVELRAGVPRYQRTMLRVLAQREGTSVDAILTRELDDVASAHAEELAAAMPELEMALAWPG
Ga0247666_1000002203	F095945	GGA	MIAVLALFFATAFPSNSRTSWMRPESFHLTIGMSRAAAVHALESNGWKTKRGDGENQLVVEYADDKSLTLQFERERLKSARFELFTILQDAPKAFDEEWAYLHEALGKPRMKSQKIVLYDQILPNVMAVLSADPKSEQAQKGVGMLVVRYYDPAK
Ga0247666_100000228	F013826	GGA	MAVCWRCPLCSEVSCEDDVNATGNPVACDHCERAFPPQETLCSVCDAPNPWQRRDTLHFLCRECGTTQTYFSHLPIAG
Ga0247666_1000002282	F002324	GGAGG	MGETKLFQVCYEGELTIDVSNAMRRLGAEPNFDQSWHVWVPDGGHAELIVRYLRMEVGIAARVLVGCAQFTTSRDFLLIRHSLTPGADYSDLHDAIARLGVVVELPFESTFVVQSPDTTDVQTLGEALGELCPDDALMVTGISHDWAYCDGTTSRMNVAALEPRELQFRTF
Ga0247666_100000294	F010845	N/A	MVLLVAACQKAEPLTAAKAEQILASSRFEAEPIYAEVPQKVWWNAHFPKDEFDERSLRTFDNLTKAGLITVTGGPTPDGAAYVAKTTQKGFPVLGTAPSARGPVFRGLICYKVYDGLRNFQRHPTEPTTGHGELAWHYTKPTPLYPMFETKQNKPLDKTFLSLVSFYYKDHQWQFDVTVRKTEAE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247666_1000002

Overview

Ecosystem & Geography

Associated Families

Sequences