NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228626_1007856

Scaffold Ga0228626_1007856


Overview

Basic Information
Taxon OID3300024321 Open in IMG/M
Scaffold IDGa0228626_1007856 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 31D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3253
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033410Metagenome / Metatranscriptome177N
F039663Metagenome / Metatranscriptome163N

Sequences

Protein IDFamilyRBSSequence
Ga0228626_10078562F033410GGAMANYPTATYAQLKSRFKALTGLDSLQASDSSFLRDLVNRAARTAHERYPWPQFTVMGESVAVVTSDANRLRIYGTSNKLANNANVVFRIHKSDPTSSRYPDEYTYLTELDSGGFPSVKIIEPTVLNGVNVFITYRKDLRSEINSGSATSGYYGDDSGDNSEVPNVWFDYMVQSSYSGFLKGDGQNEKAQLESQNAEAILAQEIDVVREQSRQYRNDILQYRAPSQFRRHNIQAGGQPVNPGIANVQ
Ga0228626_10078565F039663N/AQAEDYLTEKIPERAQYLQASQQWQQDTINTHPWISETVDTEQAEERRSVLGQIKSQYADILKSLPNGDFVAATLVRGVEAIKQDQAAKSAKPKAKRVAKAPPTTMGDSSPPVQTSATRKTANKQKILERKVISENDLAAFLAD
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