NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228670_1109460

Scaffold Ga0228670_1109460


Overview

Basic Information
Taxon OID3300024319 Open in IMG/M
Scaffold IDGa0228670_1109460 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 85D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)544
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001728Metagenome / Metatranscriptome645Y
F103244Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0228670_11094601F001728N/AMNNIELRKTKKDHYKLLLNGTDVTGEQEKSTFRHIIQVIDNG
Ga0228670_11094603F103244N/AHRRTMRVEDLTSYENDKSKVTVFMETDTDGSYHFLKHIEEKGSDNEQLIRYSLEMFMAEYYLIEKFIKDNLVEDRKFFKQVMNLKASRNE

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