Basic Information | |
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Taxon OID | 3300024319 Open in IMG/M |
Scaffold ID | Ga0228670_1028146 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Monterey Bay, California, United States - 85D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1399 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED221 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 36.8313 | Long. (o) | -121.9047 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F077259 | Metagenome / Metatranscriptome | 117 | N |
F089769 | Metagenome / Metatranscriptome | 108 | N |
Protein ID | Family | RBS | Sequence |
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Ga0228670_10281461 | F089769 | GGAG | MVDDKDIWVTYENRIDALISKKKISLSEVKELFEIGHAYNMERKLIPEALSDWMKNQADEYRSRSKSLYKTLGIDLPKSRPTDGYTMAMVVSNVWEGIFSEKPIEDIFNSIGKKYDVDSSVIMQNFMKHWSAGLDYHLVLRMRELSPFEMGLVATFVSPIIEKNKSMSNKLN |
Ga0228670_10281462 | F077259 | AGG | MRSVNFQYIQQAHTILYKNNMRLSNKRLRRLAYFDVYLQNFTHFGLYNRYKKVVNSDASNNQMITLAVVLIIFSALIIIITKLNT |
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