Scaffold Ga0228670_1021851

Overview

Basic Information

• Taxon OID: 3300024319
• Scaffold ID: Ga0228670_1021851
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 85D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1648
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071133	Metagenome / Metatranscriptome	122	N
F094928	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228670_10218513	F094928	GAGG	MVMRRSDVNSWVQSYGGGQLRTFDRTVGIYVNAYVRGTGVTSYSRGQWFYHRFEYVNASNGVYNNYVDGGINAGRIIYPIDIVDTLEDLTRRTVDLIEGRMSNRTINAYYCHASCHSSCHSSRGRR
Ga0228670_10218514	F071133	GAGG	MSMQKSYCKQMRYSGPESLSPGDATKFDVLIQMEVLSGCQQACLGCFVDKNIDPAMNQQIIDRAKELTDGVKRTGLNLREFVIGPTDFFTASNTESVLNNETVQEIMREHTGARIAAPAKFDVATMERVQEIFNILDDEDKFRREMIIEFIMPIGRVDQMLNDILYYEEVMRKVKFFK