NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228670_1011411

Scaffold Ga0228670_1011411


Overview

Basic Information
Taxon OID3300024319 Open in IMG/M
Scaffold IDGa0228670_1011411 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 85D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2479
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064200Metagenome129N
F069447Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0228670_10114113F064200N/AMIYLHRVIVEDNEATWKIYWFNPGILSQRKMVKKIQDEIYKVFPSETYSWADPAHQCFGYHLKDNLVVTNVCGSDDFNLEKNKHYKELKDQNEIFYDKDFICFYYDLENAKKWCEVYYKTDDNPEVICKTELDDGLEIAWMSEYYSDTFERMGQNLFITGKCEDIYKWIDRQNKDIDKPFTNVIDVDNGSDAVDRINTKNAFKCEYDNKGNLLRLKFFGCVKRTKVKKKGGFSHIEITSSYSSSINNIEQTEIVESKYDDNGNQVPSDIIKRVDDYIFFPKARENGKYERVLLKDM
Ga0228670_10114114F069447GGAGMKEFYSKICKKLKIGFGPNHVVANNGVTALSRWGFWSPFFTILVSRIHPIDHDKMFNNTRNDARIIYHSHETNFLSLIFWGKYIEERNVNGTIVVKERKWFNYVKRDTFHRIKAKDYAWSIQAGFTRDEKVKVKINNKIYPHRRLFTMGGRSDGTLG

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