Scaffold Ga0228670_1001187

Overview

Basic Information

• Taxon OID: 3300024319
• Scaffold ID: Ga0228670_1001187
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 85D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11955
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018181	Metagenome / Metatranscriptome	236	N
F037238	Metagenome / Metatranscriptome	168	N
F037938	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228670_10011876	F037938	GAG	VNLLNVEVNKRTSSKTEFESKKCKKSKIDDKQRGLIRRFLNVNRWITEDFYDIRDKVLAD
Ga0228670_10011878	F037238	AGGAG	MSFRSFDLLNLVRDFGETLTLRKVTTAGTYNPATGTVDSSVTTDYSVKGYLYNYNVGVAGGNDEVVRGTRKCVISALDLDAIPDFDDLIIGSGDTVKITSVMSLFSAGTAIGYICDVGE
Ga0228670_10011879	F018181	AGGAG	MKAKNQSVKVNASFYKKMEYLEDIVEDAVKEELVSIAQSAVSFSPVDTGAYVTSFSFTTGAGRPRGKSSDNKPKKQNPQQKMQEGFQNLLTDINKLDLKNTTSVQLRNGSPHAYDVEEGTNWRRTAGYKVFAKIRNIYG