NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233400_1013655

Scaffold Ga0233400_1013655


Overview

Basic Information
Taxon OID3300024318 Open in IMG/M
Scaffold IDGa0233400_1013655 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 46D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2399
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013081Metagenome / Metatranscriptome274N
F019630Metagenome / Metatranscriptome228N

Sequences

Protein IDFamilyRBSSequence
Ga0233400_10136552F013081AGGAMDLIKIVKTIEPEYKNTDQFINPLPNEVELQLDNEDYLIEVNLKEGVLETNFWQGEEKYNASDDDINYIYNYLEQLLAEKIEETKVYYNQHNYNYQIWN
Ga0233400_10136559F019630N/AYEHQQYCFKKGFIIYPVVSGNMFKVYCNRIKGNYYMKGKEFNKQGSFQAIWDLYTKIYNYEFNKIRD

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