NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247660_1027758

Scaffold Ga0247660_1027758


Overview

Basic Information
Taxon OID3300024317 Open in IMG/M
Scaffold IDGa0247660_1027758 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)904
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031578Metagenome / Metatranscriptome182Y
F034380Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0247660_10277581F034380N/AQRRETAGIGAVINPALLDRLMDLPIGITVTDPVAWAEMADQPNGVAELHEDGARIIRRLESPLTIADVIVDAATGKELRAVQDASLFAGFTRRWIAATPSRIPDAAMLEAKLCGVGIVDQRRRQLLPAEKPEGLTRDGWSWLLEEKTYRRWLTRRAGNHEQRSPARATDGASDARAS
Ga0247660_10277582F031578N/ANSRHGPLPMRRPEGDDERDESPSVLVPSLNDYVKTSKLSVFARIRRLDVLRCDDRVCRGDSLLRIADLSETDLRDGRMLAFLHNLASTEQLARRVLAAADPREAWWEACNAGARSIASLAERGVSLPVHRWLRQWLELGSAAHDYRPAG
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