NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247660_1020426

Scaffold Ga0247660_1020426


Overview

Basic Information
Taxon OID3300024317 Open in IMG/M
Scaffold IDGa0247660_1020426 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1041
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062100Metagenome / Metatranscriptome131N
F069031Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0247660_10204261F069031N/APGVAMVVLAAVLPPQWHPVPLLFAGLALIALSHVLTPCRDQITRWWRGRISKSSPDRT
Ga0247660_10204263F062100AGGAGGMALDFTIVTDVRQRFGDYARGETEAAPDADTRIGLERSFAFSCPSVDRKQFAILLFQTLGVAVRQGLEINGQTIFGGIAPSIDPAARILGPRSESPEDRTTLGTWNGHVMLIHPGVLQENNILRIRAADATAANIDDFLVDNVVVVFKT
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