Scaffold Ga0228624

Basic Information
Taxon OID	3300024313 Open in IMG/M
Scaffold ID	Ga0228624_1007139 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Monterey Bay, California, United States - 29D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024313 Open in IMG/M

Scaffold ID

Ga0228624_1007139 Open in IMG/M

Source Dataset Name

Seawater microbial communities from Monterey Bay, California, United States - 29D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3139
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3139

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.8313	Long. (^o)	-121.9047	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.8313

Long. (^o)

-121.9047

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052547	Metagenome / Metatranscriptome	142	N
F066463	Metagenome / Metatranscriptome	126	N
F077304	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228624_10071391	F077304	N/A	YRISEWAYPVYYDFLVAIKKIFDEHEQKIKVVWVTSFQFSKRDRVEKLLDDLNAVDIPSYIICSYDFDGRPTKGPYAKNIEYFADYIVSINMVATTLSIKKFMADDDEYFHYLYEKFDEFYFDDYIPDRGFDYMIPSDSEYLEFLKFVYHNYPDINPIKDLIYNESNHMHCLALNKVTIFPDNSTSNCRWDRYDQRDFNTKYERKDNAGMMQAYMDENGCLSCKWWNKCGFRCYTQWDWKNRERDLPDCIMRMWFNYMDKTGQNLITGFDYDKEKT
Ga0228624_10071393	F052547	GAGG	MGIVTNNKRAAQADKDFNLSFNEGHEIKVQFNCEVLSGCEFKCKGCFVNKLGSNMGSYDRLNNAIDLFNTNGYRVSTVNIGPTDLFGNNNVIELLQDETFRECLSKVSTIQFVTTLTNISSEVIDLLNSIPKIDGFMYDVNIALQPPVDWDWVEERLELLNGFTDDLNYYMVYNMGNDDEYNSKVLEMSELVEDRFDSILTLNPSFFRAPKSKVQQHLIEKWKGYDFSDDLMPKTFIDQAQGGSLELNYTYCNERFFWTPFVYDIALIGTDEFKVKDENDIESWTEAKSFQFMEQLTYSAETNNCGSCPNMMTCIDKGVLSYMKHHSLLSCVFPGVVTTNKS
Ga0228624_10071394	F066463	N/A	ALDERVETFKNSSLNFEISMATNIVQGVEDILFPAIEFVRDRYETVIEVLPSVVRSFNHSAKHGDKLFEWNDMLSRLAVDPNRFKNKFHFLQGDVSHKAFHYSVISIYHGDMYLSPFIYENAQIHTDDFKVDNGWLWLPDADITDYILRKKDEVVVSQIENSGNKECGSCKYLNICANRMVPMIMDTVFSGRKECILNKDVISLYDDEVYHGNSY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0228624_1007139

Overview

Ecosystem & Geography

Associated Families

Sequences