NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255211_1026097

Scaffold Ga0255211_1026097


Overview

Basic Information
Taxon OID3300024311 Open in IMG/M
Scaffold IDGa0255211_1026097 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Yuk_RepB_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1071
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Louisiana
CoordinatesLat. (o)29.8571Long. (o)-89.9778Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045790Metagenome / Metatranscriptome152N
F060853Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0255211_10260973F060853N/AMYNIILLGKGKQMAVQQLLDNLYLTPAPWRKWMQTREEIIQDWKAGKDFRIQSGPYCSIRDIEYLRGSYNRIYIIHDRGSIEV
Ga0255211_10260974F045790AGGMMDIHELREELLEQAMEHLDCKFRTQKKFALMFFEHKLKQGVPIDNYMSYMPQIYTPEEVLGLAKAMEAYVMGGNGK

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