Scaffold Ga0255178_1001028

Overview

Basic Information

• Taxon OID: 3300024298
• Scaffold ID: Ga0255178_1001028
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepC_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6472
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009140	Metagenome / Metatranscriptome	322	Y
F011742	Metagenome	287	N
F034503	Metagenome	174	Y
F046258	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255178_100102811	F009140	AGGA	MRLNLTHKTLLKRLKDGPRTMPQLTHSNTNDNAVSFHYAKYLPEMERFGYVIFHDEMWHLTEFGRMEMNRAVSGAAARIENGSVREPYDGRELRRNVFRAGCYDFLKCPSRFGDNLVYQKSI
Ga0255178_100102814	F034503	N/A	MTKHEAHQLLDKRKQGLAVPQYLVNRALVVSGDIAMACPPCQTARMEGSGVAQGEGVGGLPNSPMAWDNPRLNQRNESTQ
Ga0255178_10010283	F011742	AGGAG	MRTIDFVPFNWDDPDFNPEIDRIEVDYEWHEGDSSVGLLAMCEKTVKWMRFNLQIKDITDELSYADLAYLKHEINENDKKAFDDD
Ga0255178_10010289	F046258	GGAG	MKLLMIAMRQVLSYFEIVTSPPRSTTLYKEKTPARMTLPTIRVTDPKFVYHSAACTDISQTFEKVKHERLQRLLNDANGNRKQSEGTEQQVPKQKLRRVHG