NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228658_1101561

Scaffold Ga0228658_1101561


Overview

Basic Information
Taxon OID3300024297 Open in IMG/M
Scaffold IDGa0228658_1101561 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 71D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)709
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043416Metagenome / Metatranscriptome156Y
F100470Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0228658_11015613F100470GAGGMKDMFEVDDEAIRNLVILAKEGEKMDPINWGDLSITEDQAYIMMATHVLQMERNHLTDGAIIVKLLVENFVLNCKLMGMK
Ga0228658_11015614F043416N/AIAKWLDICKVHWKEIFALSFALHFIMDLLIIGPLFFLLGYFFGIEAGH

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