NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228658_1018946

Scaffold Ga0228658_1018946


Overview

Basic Information
Taxon OID3300024297 Open in IMG/M
Scaffold IDGa0228658_1018946 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 71D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1788
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022761Metagenome213Y
F088932Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0228658_10189465F022761N/AMKIKKYDIAITKPWSKEMYDHNDGVLREVVEEVKAKWLHAYHNLENEYYIGSSDNDYEFQDAPWNYEADSILQDIQKAILVTSYGSGFTMHDVHNDVHLELEAMPYWRAKEVAEDLSLSLSKKFIGLG
Ga0228658_10189466F088932AGGAMARSWKFREMGSRDKKTGKLSYYTVTVTDYRISNCECKARQF

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