Scaffold Ga0228658_1017669

Overview

Basic Information

• Taxon OID: 3300024297
• Scaffold ID: Ga0228658_1017669
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 71D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1855
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002182	Metagenome / Metatranscriptome	586	Y
F003920	Metagenome / Metatranscriptome	462	Y
F088730	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228658_10176691	F003920	N/A	MLLRVLLIYCVLTTVAYAFHLNTFAVWELKEELQIRMMNLWELFQQLEYVTQEQRIIVYEEIDHIRQDIQRIIDQLIEHDRGQHP
Ga0228658_10176693	F002182	AGGA	MIYTDQEHEWLSKPAKKNKRVSNQTADGRPPESKDLRKHDWAIKTTIEVDGKQYVVPVQV
Ga0228658_10176694	F088730	AGG	MIQRNRQRNTPYLMPFKRDITRFYMNVASRINFYGWSIRNGHKT