Scaffold Ga0228658_1014679

Overview

Basic Information

• Taxon OID: 3300024297
• Scaffold ID: Ga0228658_1014679
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 71D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2042
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047915	Metagenome / Metatranscriptome	149	Y
F072253	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228658_10146794	F072253	AGGA	MPKKESMWIMGNKGPTGPWLWQVWVKGTKKPLRMIAFDIQHIKDQLEGKTFVKAKRLPEEKDNFRDSPPLGPKGYKGSSRTADYDAGFKVLRQWIDENGGPPEEIRKKLRELWIDYDKAPQKTTRYSVKKRGRHKI
Ga0228658_10146795	F047915	N/A	MTKMKAIGISFLDGMLFGAYTVGPVMVFLWAIGFISINI