Scaffold Ga0228658_1006589

Overview

Basic Information

• Taxon OID: 3300024297
• Scaffold ID: Ga0228658_1006589
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 71D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3079
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010473	Metagenome / Metatranscriptome	303	Y
F013081	Metagenome / Metatranscriptome	274	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228658_10065894	F013081	AGGA	MDLIKIVKTIEPEYKNTDQCINPLPNEVELQLDNEDYLIEVNLKEGVLETNFWQGEEKYNASDDEINYIYNYLEHHLLNKIEETKVYYNQHNYNYQIFNN
Ga0228658_10065898	F010473	N/A	LFGIYTLKYTTMNLIRYEIKAGFFKGFLFGVRHYPFDDEEIYEEDIVLYIGIFQIIITLIYEK