Scaffold Ga0228658_1005418

Overview

Basic Information

• Taxon OID: 3300024297
• Scaffold ID: Ga0228658_1005418
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 71D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3428
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008425	Metagenome / Metatranscriptome	333	Y
F040126	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228658_10054184	F040126	N/A	MKKVPLFEDFIPVGFAADNATQFSMGGSSRPETGYSMDAIVGPVEQCSNHVAEQANSYESNDNADHTAKAYIKEAKKHINDKIDEACENYSAMGESTLNEGTDISSWNQAGIKGSDNAQITTFVGPKDVESFGLGRKCMQINIGRNYVQLNPADIVELKDLLKNYKV
Ga0228658_10054186	F008425	AGGA	MPDKDITYKQFIAHMDKGNRVYMKKPRSWQKVWFWWESKKEKWFLNKAFDKREDGRVEPEPSVWITAKQMESHMDHMVRQGYKYYIDE