Scaffold Ga0228629_1029206

Overview

Basic Information

• Taxon OID: 3300024296
• Scaffold ID: Ga0228629_1029206
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 36D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1488
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F004988	Metagenome / Metatranscriptome	416	Y
F046006	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228629_10292063	F004988	N/A	MESESLVKTICPRCDGNGYIRITPVIAGVFDRSSEIDCPMCEEEFTHMGKKVTAHNGYVLLPKNQTRINIEGGRESKTKWSGETLPEVGK
Ga0228629_10292064	F046006	GGAGG	VKEFLTPLGKYTNFVLLLLILHFCITVMVVNFRYIDRLNNTIDTMWHEIEQVKDTNIQLYQFIEEHGDDIKGR
Ga0228629_10292065	F000720	AGGAG	MTLKDDKIMRATIPDRMMSTTFTLPIDDRKVVGIVNYTANKNGVIPLAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKDLADTLSQDNIIGQMVNYFTKNVEDIIMGVPIDKKQRMLSTDPYASQMKE