Scaffold Ga0255147_1024083

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1024083
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1262
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010764	Metagenome / Metatranscriptome	299	Y
F030059	Metagenome / Metatranscriptome	186	Y
F037700	Metagenome / Metatranscriptome	167	Y
F071163	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_10240831	F010764	N/A	EIQKNYKLTLTEQQAKELYWILKDVNLDVDNELKLVYHELKKLFDSGIR
Ga0255147_10240832	F037700	GGA	MKKYRIKKETYGDTTKYFPQEKFLYCWYNIFAYDVYFDGGYSTLEEAQKHLCVYCRGTMVEYLDFDPARDCK
Ga0255147_10240834	F030059	GGAG	MNETINKNLTLIQEVATKALDEHKETAFSGFKGVNYADLRVVDVWVKYSIHEEDLEYGVLIEECSPTAYDFQDYMLEYLKDNLPNNLGWSIYVELDW
Ga0255147_10240835	F071163	GGAG	MTKTQKALERVILELDSWCDNWTPTSYNDPRISLRQIADRARDVLEEETNNYLLII