Scaffold Ga0255147_1007130

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1007130
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2514
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F006984	Metagenome / Metatranscriptome	360	Y
F007470	Metagenome / Metatranscriptome	350	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_10071301	F006984	AGGA	MPNWVYNTVTIQGPKSEIDYIKDRLNRPFTLAQETFGMGDISLSGFPTKIEQVTYSNPVFAFFNIHSYKDEGITDEEYACQPNRD
Ga0255147_10071302	F000450	AGGA	VGDRANFAFVQPNGNTIVLYGHWAGGGMLSALAEAVTFARPRWNDPAYATRIAISRLIGDQWNMETGWGLHVNEIGDNEHKIAVVDFSQQTFSLHAEADHRDETNKVRGMNNTPIFIQDLETFCEKYADTYSLV
Ga0255147_10071304	F007470	AGGAG	MDYQEGFQDGVKFAREVIINNIRLWAESSDEGQVMDDIADRLEFGTVDYDL
Ga0255147_10071305	F000311	GGA	MYFELTAPNQIALKRAFWSAEMMGLDPMLIAPLTFNIGTGSIEKVSSIRDTYNLKETYVSDYEPTGYTRR