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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024289 Open in IMG/M |
| Scaffold ID | Ga0255147_1003324 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3786 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Cobetia → Cobetia marina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 31.4271 | Long. (o) | -81.6053 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006785 | Metagenome / Metatranscriptome | 364 | Y |
| F035291 | Metagenome / Metatranscriptome | 172 | Y |
| F052478 | Metagenome / Metatranscriptome | 142 | N |
| F088827 | Metagenome / Metatranscriptome | 109 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0255147_10033242 | F035291 | AGG | MAQTIPKAHPLLERVDRLASCEGHWLLIRDGEPETDCGHQWHQTPEAHLETCLREHWRGVSLGFAPSYCGYSDYSRTGLVGLSNYRVMTDKASTPDPNGAVLETGYGWNGRGVVLDLRYVTEDQLETIEALESYPLISEDDHSQLECEGVEADWGRESIADRVRTLQQLGLCIFAARDDAAPWRDGFDRLRESILETLNEYPTELA |
| Ga0255147_10033243 | F006785 | AGG | MFTSARERQDLREQEREQIRLEKRQLRDLRWAIERSTVKASDWQDLLTLHQMHGKEGPLQLWRELVPYWRDCQRVNRGADMPAELFPQAKGLLTRQTEKAPATRVKAAKGSTRKTRSDAGKRQPSRKLNK |
| Ga0255147_10033244 | F088827 | N/A | VNLTQYALQYAPALAHLVPALEEHDAVICGYSAGPQKPDDPQPQNLSICIDNPWREPDQWVTIYSASHCEWWSHGEQYQLTFEQLLAYLRQLPRPLHSFSRYCEEDA |
| Ga0255147_10033246 | F052478 | N/A | MAGAMLVLAGVFIGLYGLLVLLDDREPDGTVREGIAGAIKRRQSRE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |