Scaffold Ga0255147_1002005

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1002005
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4967
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002764	Metagenome	531	Y
F011742	Metagenome	287	N
F020138	Metagenome	225	Y
F033724	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_10020052	F020138	AGG	MNQQQTTRLNAFWQDVEAHKALNPSMPEQALVILKSVALDALLAAQDIELIGVDDENN
Ga0255147_10020053	F011742	AGGAG	MRTIDFVPFEWDDPDFNPEIDRIEVDYEWHEGDSSVGLLAMCEKTVKWMRFNLQIKDITDELSYADLAYLKHEINENDKKAFDDD
Ga0255147_10020055	F002764	GAGG	MKTEEDEAFEELAKRQGDWGLQGSRKHQIMRYAENMERNQVLEEVANELETRFTGPFGRDTVASFAAFVRGMKK
Ga0255147_10020059	F033724	GAG	MPRPQSELTSVSKTISARLAPAYYAEWKRLGGVAWLRQYLLQSIKNREQQKPR