Scaffold Ga0255147_1001697

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1001697
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5396
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013526	Metagenome / Metatranscriptome	270	Y
F015730	Metagenome / Metatranscriptome	252	Y
F016958	Metagenome / Metatranscriptome	243	Y
F026861	Metagenome / Metatranscriptome	196	Y
F029721	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100169714	F016958	AGAAG	MKLTITSMAGNTFEMNLPTKENVYYFIDMYKKSLKKNQRVKITCDVLSIDGYIQGTAPIR
Ga0255147_10016972	F029721	AGGA	MRTYSIVDLLVGQYYRPTSLARRYQGGEITYAEKRDDVWVGENYEAYAIRFNGNRWATIAVKVSE
Ga0255147_10016975	F026861	AGG	MKLDEFKALIEQQRKAQQLTNLEKIAKIVATTNTKGKN
Ga0255147_10016977	F015730	AGGAG	MLTQKTLDKIVYEYQHGGVQNYHPEISMSERKALLKYLFTLPNKCSNEKCEATH
Ga0255147_10016978	F013526	AGGAG	LSKKNILISFVTDAETDLDAIFALNKVMYKLPESDVVKFDAFEVLDVVE