Scaffold Ga0255147_1001619

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1001619
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5548
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F003582	Metagenome / Metatranscriptome	478	Y
F012975	Metagenome / Metatranscriptome	275	Y
F016396	Metagenome / Metatranscriptome	247	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100161913	F016396	GGAG	LRKSERLRLLEMQVVRLEMMVELYTQALNNLLESQGMGVNNLDAGKWYADKLDKLNKK
Ga0255147_10016192	F003582	N/A	MNTYSIKLEINAEVQAFSEEDAVDYANDIFGVDDEVKNVKVVSVKEK
Ga0255147_10016195	F012975	AGGA	MLNLTLKGVEVFIKRSQTNKQESYWDNYDLMIWKEDSGGFTSVKGMFRRNNWGIAERVSVSKDGVWKLPKKYVRYFK
Ga0255147_10016197	F000473	AGGA	MELIGNKDHFKHGINLWNGEPNKPVFYNEEMRKKLREIKKPVQDLMMDVVQYPDFLALRLYEDNFIQYQGTRKEMVIDYVSKVKRLIESYGVRCELEGVPSEKILRSS