Scaffold Ga0255147_1001491

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1001491
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5829
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008077	Metagenome / Metatranscriptome	339	Y
F008238	Metagenome / Metatranscriptome	336	Y
F008617	Metagenome / Metatranscriptome	330	Y
F028171	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100149111	F008617	N/A	MNRLNNAICLLIVAAVFAMIGIESGNQSGATHSGNQQLVEVRK
Ga0255147_100149114	F008077	GGAG	MAVQLTPEQQFEIEKQARTLLDSKDAGAMAAALLKQACYQQQLLQQAVNEIARLECELMK
Ga0255147_100149115	F008238	GAG	MSFKLNLSIFKSTKPESKLDFSGMMNVKVEELDAFCAFVMSQTPDQYGSVQVPISGWKKTSSKGLAYVSAVAQPPRDWVPPVTAQSAAQSLAKATDGVVSEITEADLF
Ga0255147_10014917	F028171	GGAGG	MADHIRAKLEALISDSGMFNAGRQEERVRLGNLLRVRLDQLANLPSHPHISARREELLNILQALMSS