Scaffold Ga0255147_1000983

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1000983
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7356
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F017122	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_10009832	F004722	GGAG	MKEIRQAKTADLHRAAAFLEWARGIRKDCTKQRSSARAAQSNAWRKGVDEDVRWRV
Ga0255147_10009834	F006109	N/A	MTRYVVMVEDRWVTAVYGPGKGIGLTASKEDASSWVTYERAVAAARVVAECTNSAVAVHSIDEPAYFKSWK
Ga0255147_10009835	F017122	N/A	MEVTPFQQQLDPELRLGEGRSRTSAPKTALFELKIWLPGQGAMRDLIRAESLQQALTFAANRYPNCKVEVPDAVAKKPRLVRSNNGPKESARRRLKLVESKNEQP