NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1000924

Scaffold Ga0255147_1000924


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000924 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7605
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004154Metagenome / Metatranscriptome450Y
F005349Metagenome / Metatranscriptome403Y
F013636Metagenome / Metatranscriptome269Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_100092412F005349N/AMYVIHKQLMPVDKNMGDPNWAKRQVWVLKLNPNDTIDEFENLADAEAKRDELMNSDPTGRIYKVSLKNEDGSFSDI
Ga0255147_100092413F004154N/AMSKVKYYILRYWVSFVFLVLAFYFYEPHPSLIHCSPNSLIIFGEPKTLLGLGEMSWMWILMAIAHGANACYCDIKSLLKKR
Ga0255147_10009249F013636AGGMVNPNVAWKKYLNSSNPTINKYLSDYGDSILHQTFQRLTLAIKSKKSHIILFRFKDSDIVSKIYQKDYMSALEMLLNLCIKLEKYEMCRDIHNQIKIFKLKAARGKPKAKVMKIKT

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