Scaffold Ga0255147_1000801

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1000801
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8179
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (74.29%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008943	Metagenome / Metatranscriptome	325	Y
F013514	Metagenome / Metatranscriptome	270	Y
F019061	Metagenome / Metatranscriptome	232	Y
F030059	Metagenome / Metatranscriptome	186	Y
F032252	Metagenome / Metatranscriptome	180	Y
F036765	Metagenome / Metatranscriptome	169	Y
F047649	Metagenome / Metatranscriptome	149	N
F048267	Metagenome / Metatranscriptome	148	Y
F057309	Metagenome / Metatranscriptome	136	Y
F071163	Metagenome / Metatranscriptome	122	N
F072267	Metagenome / Metatranscriptome	121	Y
F074911	Metagenome / Metatranscriptome	119	N
F091921	Metagenome / Metatranscriptome	107	Y
F099191	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100080112	F013514	GAGG	MYSIEELQKYLDDNNITFEEYLRANMITDEERKYIDKIWVDAIYKNFGEDT
Ga0255147_100080113	F057309	GGA	MTNPLIDKYNEIYGKKEKPKLPRIEDYEGEETFADELKKSKPPILKSYDLDDLKTSFQQVAEQLQNDEAQVVSMNMEFGDHMNKITFEVYLDV
Ga0255147_100080114	F047649	AGGA	MRYYETRTYGHQCDFDAKNRAEKASQDYYNKWINLRKEVRNLVREQNLTITPDFAKLIGL
Ga0255147_100080116	F072267	N/A	MTERIGYKLNPNKLKGAPQIILPYFVGAFYYTEDYEYFDVIKPYLDIPEKPKTLEEISQEFDEKIDKQIEDVEYKFAQLKYRQEYQFSKKITKIIEDIEYARRNGSFPAKLDYSKLTATGSNITSSFVIKQGNNHEGYYTFGNCRSFRYYMPTKPNAITRWFMKNCLSFIWVSEK
Ga0255147_100080119	F048267	AGGTGG	MTDEEWETSLKSMNEGVKKWVDEEIDKIKYNIIKDIINGDVEAL
Ga0255147_100080120	F032252	GAGG	MKLYRYKKDGHLYTLYEQLRPFYNLVAVPYFPNQGVLAKSKRSISMTDFEVVSER
Ga0255147_100080121	F019061	N/A	MTEQPTDTEILEFLLNQFQAHSLKMNGESDWYFINTGFPMNHAKGQTARDAVITAMRAK
Ga0255147_100080122	F074911	AGGAG	MILDEEVIKLVKEHFEEDWDENDGWEYSGNFDAFVKFAQEIFQMGYNEGSYDMSYYDG
Ga0255147_100080123	F071163	GGAG	MWSWSGKMTKTQSALERVIIELDSWCDNWTPTSYNDPRISLRQIADRARNVLEQEKNDYDFR
Ga0255147_100080124	F030059	N/A	MNDTINKNLTLIQEVANKALELHKNSTERFGGVNYADLRVVDVWVKYSIHEEDLEYGVLIEECSPTAYDFQDYMLEYLKDNLPNNLGWSIYVELEW
Ga0255147_100080129	F091921	GGAG	MIELRIVENELGVKPDIQHRFMLFSVGQGGYLCPPNPDMKWSEWRTCPYVNAEEIEND
Ga0255147_10008013	F036765	GGAG	MTIKVTELLKLFTKANQLDLSVEVREDKDGDYVVRIYEMFRPENFDEKAVITQKGESNWNKDGYSFDYMMDVLDGMLEEKRQEKIKEQKRQELLARLTDEEKELLGVK
Ga0255147_100080130	F008943	GGAGG	MKLDGFDWAIFSLFFGIIVAGSIITYDAQQQRALFQQTYNKNLECRQALKDQTVGRVNEICGDVPVIGDFVK
Ga0255147_10008017	F047649	N/A	MRYYESRTYEHQCDFDAKNRAQKASQDYYKKWINLRKEVRNLVREQNLTITPEFSKLIGL
Ga0255147_10008019	F099191	N/A	MKRNNFDFTDAWIAVITGGIVLVLLAAPITGVMKVITTQQALNEQCGTHYNFFQVATAGDNLSRLCQIKNQTVTVK